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InterMine is an general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.
A tool to analyze a set of ESTs. Cleans, clusters and annotates the sequences and prepares a web site to browse the results in a complete automatic way.
The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference using DNA microarrays, built mostly using R.