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CLEML: Carbon Labeling Experiment Markup Language
38599
CLEML: Carbon Labeling Experiment Markup Language
http://sg.ustc.edu.cn/MFA/cleml/
CLEML open format for representing and exchanging 13C metabolic flux analysis models.
Biology > Bioinformatics > Software > Software Development
cleml libcleml cle mfa 13c metabolism metabolic flux analysis bioinformatics life science systems biology metaboloc pathway gene network biological transpath sbml simulations modeling matlab dynamic system
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software > Software Development
The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference using DNA microarrays, built mostly using R.
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Predict metabolic pathways from genomes and graphically depict pathways. Visualize gene expression data on a metabolic pathway map. Generate a metabolic wall chart. Includes a genome browser and support for transcriptional regulatory networks.
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Guide to running this programming language. Library contains programs to compute pairwise alignments, phylogenetic trees, multiple sequence alignments, and to make secondary structure predictions.
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4. BioJava.org
The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.
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5. Dynamite
Code generator for writing dynamic programming programs.
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6. BioLisp.org
BioLisp.org is a public resource supporting scientists who use Lisp to develop intelligent applications in the biological sciences. We collect and disseminate Lisp biocomputing code, and gather pointers to Lisp and other Intelligent BioComputing methods.
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7. BioRuby
BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language.
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CLEML open format for representing and exchanging 13C metabolic flux analysis models.
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PAL library is a Java toolkit for determining evolutionary trends.
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The National Cancer Institute's Center for Bioinformatics produces the caCORE infrastructure, an open-source enterprise architecture for cancer informatics.
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