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BioWarehouse Database Integration System
38600
BioWarehouse Database Integration System
http://biowarehouse.ai.sri.com/
Integrates multiple public bioinformatics databases into a single relational database system within a common bioinformatics schema.
Biology > Bioinformatics > Software > Software Development
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software > Software Development
1. JCell
A Java based framework to reconstruct genetic interactions from microarray data.
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2. Sight
Extendable parallel system for automatic genome analysis. Software for analysing all potential genes in a defined genome region. Given two marker names, can output reports of genomic features between them. Features for converting between naming systems, sequence retrieval, E-PCR, gene prediction, similarity search, protein pattern search, and report formatting. Written in Java.
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3. AcePerl
4. MolTalk
Software development for structural bioinformatics. Runs on Unix, Windows and MacOSX.
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A set of software tools that filter, format, and merge data in tabular or common biological formats. Organized as a classified collection of Perl one-liners.
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CLEML open format for representing and exchanging 13C metabolic flux analysis models.
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7. InterMine
InterMine is an general-purpose object-oriented data warehouse system developed as part of the FlyMine project and made available as stand-alone open-source software.
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8. Bioperl.org
The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.
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PAL library is a Java toolkit for determining evolutionary trends.
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10. Bionconductor
The Bioconductor project produces an open source software framework that will assist biologists and statisticians working in bioinformatics, with primary emphasis on inference using DNA microarrays, built mostly using R.
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