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Cell Electrophysiology Simulation Environment (CESE)
38601
Cell Electrophysiology Simulation Environment (CESE)
http://cese.sourceforge.net/
A framework to perform electrophysiological simulations. Useful for simulations of action potentials, individual ionic currents, and changes in ionic concentrations.
Biology > Bioinformatics > Software > Software Development
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software > Software Development
XEMBL provides access to the EMBL/GenBank/DDBJ Nucleotide Sequence Database, providing output in various XML standards.
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Guide to running this programming language. Library contains programs to compute pairwise alignments, phylogenetic trees, multiple sequence alignments, and to make secondary structure predictions.
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3. Boulder.pm
Simple but powerful data exchange language, suitable for serializing biological data objects.
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4. JCell
A Java based framework to reconstruct genetic interactions from microarray data.
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Analytical tools and SQL scripts that solve common problems in drug discovery.
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6. BioRuby
BioRuby project aims to implement an integrated environment for Bioinformatics with Ruby language.
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7. Sight
Extendable parallel system for automatic genome analysis. Software for analysing all potential genes in a defined genome region. Given two marker names, can output reports of genomic features between them. Features for converting between naming systems, sequence retrieval, E-PCR, gene prediction, similarity search, protein pattern search, and report formatting. Written in Java.
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Predict metabolic pathways from genomes and graphically depict pathways. Visualize gene expression data on a metabolic pathway map. Generate a metabolic wall chart. Includes a genome browser and support for transcriptional regulatory networks.
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9. Bioperl.org
The Bioperl Project is an international association of developers of open source Perl tools for bioinformatics, genomics and life science research. The Bioperl server provides an online resource for modules, scripts, and web links.
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The National Cancer Institute's Center for Bioinformatics produces the caCORE infrastructure, an open-source enterprise architecture for cancer informatics.
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