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Pathway Tools
38602
Pathway Tools
http://bioinformatics.ai.sri.com/ptools/
Predict metabolic pathways from genomes and graphically depict pathways. Visualize gene expression data on a metabolic pathway map. Generate a metabolic wall chart. Includes a genome browser and support for transcriptional regulatory networks.
Biology > Bioinformatics > Software > Software Development
Jan 6, 2008
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Other links at Biology > Bioinformatics > Software > Software Development
1. BioJava.org
The BioJava Project is an open-source project dedicated to providing Java tools for processing biological data.
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2. BioPython
The Biopython Project is an international association of developers of freely available Python tools for computational molecular biology.
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PAL library is a Java toolkit for determining evolutionary trends.
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4. AceDB
A hierarchical database system for displaying genomic data (originally C. elegans), suitable also for displaying other scientific data.
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The National Cancer Institute's Center for Bioinformatics produces the caCORE infrastructure, an open-source enterprise architecture for cancer informatics.
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6. JCell
A Java based framework to reconstruct genetic interactions from microarray data.
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Predict metabolic pathways from genomes and graphically depict pathways. Visualize gene expression data on a metabolic pathway map. Generate a metabolic wall chart. Includes a genome browser and support for transcriptional regulatory networks.
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8. BioPHP
An open source project to develop PHP code and scripts for biocomputing. A wiki-like service allows collaboration between developers.
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Analytical tools and SQL scripts that solve common problems in drug discovery.
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10. Dynamite
Code generator for writing dynamic programming programs.
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