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CREME: Cis-REgulatory Module Explorer
59581
CREME: Cis-REgulatory Module Explorer
http://creme.dcode.org/
Identifies modules of putative transcription factor binding sites that are specific to promoters of co-expressed human genes. Provides a resource for decoding microarray experiments.
Biology > Genetics > Software
Jan 6, 2008
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Other links at Biology > Genetics > Software
1. GENtle
GPL software for viewing and editing DNA and amino acid sequences. Integrated alignment, PCR, BLAST searches, and shared databases. Windows version is available for download (English and German).
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The Sequence Manipulation Suite is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. It is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
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Database system to build and publish synonymised checklists of species. Species descriptions include pre-established fields and detailed descriptions employing any number of user-defined fields.
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Software and reagent for improving the quality and read length of DNA sequence traces collected on the ABI 3730 DNA sequencer.
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5. Synopsis
Commercial Windows software for visualization and annotation of genomic data.
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6. Seqool
Free Windows software tool for the analysis of DNA and RNA sequences. It includes several sequence statistics and a comprehensive set of signal search methods.
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Open source database and analysis package used to archive and analyze expression data from gene chip experiments. Includes microarray center workflow management, and researcher tools to analyze final data.
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8. Pegasys
Open source software for executing and integrating analyses of biological sequences. Includes documentation and installation instructions.
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Program that draws chromosome maps (as EMF files) using the output of MapMaker EXP. Delphi source code is freely available upon request. The software is available under the MIT licence.
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Offers a wide range of software for genome sequence analysis, genetic variation, linkage analysis, expression analysis, and PCR primer selection.
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