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The Sequence Manipulation Suite
59584
The Sequence Manipulation Suite
http://bioinformatics.org/sms2/
The Sequence Manipulation Suite is a collection of JavaScript programs for generating, formatting, and analyzing short DNA and protein sequences. It is commonly used by molecular biologists, for teaching purposes, and for program and algorithm testing.
Biology > Genetics > Software
Jan 6, 2008
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Other links at Biology > Genetics > Software
Software and reagent for improving the quality and read length of DNA sequence traces collected on the ABI 3730 DNA sequencer.
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Designed to create a database of mutation loci, to make this information available to as many people as possible. No longer being maintained.
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Identifies modules of putative transcription factor binding sites that are specific to promoters of co-expressed human genes. Provides a resource for decoding microarray experiments.
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Genetic networks controlling development in Sea Urchin represented as Java applets. Formal scheme. Molecular interactions modelled as Petri Net.
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Offers a wide range of software for genome sequence analysis, genetic variation, linkage analysis, expression analysis, and PCR primer selection.
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6. GeneSifter
Web-based microarray analysis system that combines data management and analytical functions with integrated, current gene annotation from public databases. Product overview in pdf format.
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Software to automatically detect mutations from DNA sequence data, including homozygous, heterozygous, insertion and deletion.
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8. Pegasys
Open source software for executing and integrating analyses of biological sequences. Includes documentation and installation instructions.
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BioConstructor is a bioinformatics solution focussing on molecular cloning. Runs on Windows, Mac OS X, Linux.
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Open source database and analysis package used to archive and analyze expression data from gene chip experiments. Includes microarray center workflow management, and researcher tools to analyze final data.
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