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Web Links [Tag : alignment]
1. YASS
Offers downloadable program to perform local alignment of DNA sequences.
Details Hits: 1 Votes: 0 Ratings: 
Reviews: 
Google PR: 2. DNA Baser
Commercial sequence package for contig assembly in batch mode, to investigate genomic fragments, rRNA and protein genes. Includes trial download for Microsoft platforms from Windows 95 to XP.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 3. AgileBio
LIMS and collaborative software for molecular biology labs.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: Developer of Sequencher for DNA sequence alignment and analysis on Windows and Mac platforms.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: Listing of computational molecular biology course pages that have extensive online course materials.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 6. ParAlign
Service using the ParAlign algorithm to compare genetic sequences. Apparently it is as fast as BLAST and as sensitive as Smith-Waterman.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 7. GWBLAST
Genome-Wide BLAST search for similarity searching against genes or proteins. Integrated with multiple alignments and phylogenetic tree capabilities.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 8. TreeGen
Tree generation from distance data. [Results by email]
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 9. JAligner
Open source Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 10. Dali server
The Dali server is a network service for comparing protein structures in 3D.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: The IBIVU hosts biostatistics, computer science, genomics, molecular cell physiology and core bioinformatics groups for research and education. Teaching includes an international 2-year bioinformatics master course.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 12. NCBI BLAST
BLAST (Basic Local Alignment Search Tool) is a set of similarity search programs designed to explore all of the available sequence databases regardless of whether the query is protein or DNA.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 13. Darwin
An interactive tool for peptide and nucleotide sequence analysis.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 14. AnnHyb
Free software for working with and managing nucleotide sequences in multiple formats. Features include sequence annotation, restriction analysis, pattern searching, retrieval from servers. Released under GNU Public Licence.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 15. Mauve
Free software for constructing global alignments of multiple rearranged genomes. The visualization environment displays sequence similarity profiles and annotated sequence features.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 16. SeWeR
An integrated portal for common web-based bioinformatics services. Built in Javascript as a standalone browser application.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 17. DNA Counter
Small free Windows program to calculate nucleotides frequencies in DNA sequences.
Details Hits: 2 Votes: 0 Ratings: Reviews: Google PR: 18. FASTA Convertor
Free Windows tool for merging multiple FASTA files into a single FASTA file.
Details Hits: 3 Votes: 0 Ratings: Reviews: Google PR: 19. KoriBlast
Commercial graphical software for Blast searches.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 20. NeoBio
An open source library of Java bioinformatics algorithms. The current version consists mainly of sequence alignment algorithms such as Needleman- Wunsch and Smith-Waterman.
Details Hits: 1 Votes: 0 Ratings: Reviews: Google PR:
