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Web Links [Tag : alignments]
1. ParAlign
Service using the ParAlign algorithm to compare genetic sequences. Apparently it is as fast as BLAST and as sensitive as Smith-Waterman.
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Reviews: 
Google PR: Most widely used server for analysing protein sequences, searching protein databases, and predicting protein structure - from Columbia Univ.
Details Hits: 0 Votes: 0 Ratings: Reviews: Google PR: 3. STRAP
Software supports the analysis of hundreds of proteins and integrates aa sequence, secondary structure, 3D-structure and genomic- and mRNA-sequence, and residue annotation.
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